1. Academic Validation
  2. Pyrido[2,3-b][1,5]benzoxazepin-5(6H)-one derivatives as CDK8 inhibitors

Pyrido[2,3-b][1,5]benzoxazepin-5(6H)-one derivatives as CDK8 inhibitors

  • Eur J Med Chem. 2020 Sep 1;201:112443. doi: 10.1016/j.ejmech.2020.112443.
Sonia Martínez-González 1 Ana Belén García 1 M Isabel Albarrán 1 Antonio Cebriá 1 Adrián Amezquita-Alves 1 Francisco Javier García-Campos 1 Jaime Martínez-Gago 2 Jorge Martínez-Torrecuadrada 2 I G Muñoz 2 Carmen Blanco-Aparicio 1 Joaquín Pastor 3
Affiliations

Affiliations

  • 1 Experimental Therapeutics Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fernández Almagro 3, E-28029, Madrid, Spain.
  • 2 Crystallography and Protein Engineering Unit, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fernández Almagro 3, E-28029, Madrid, Spain.
  • 3 Experimental Therapeutics Programme, Spanish National Cancer Research Centre (CNIO), C/ Melchor Fernández Almagro 3, E-28029, Madrid, Spain. Electronic address: jpastor@cnio.es.
Abstract

CDK8 is a cyclin-dependent kinase that forms part of the mediator complex, and modulates the transcriptional output from distinct transcription factors involved in oncogenic control. Overexpression of CDK8 has been observed in various cancers, representing a potential target for developing novel CDK8 inhibitors in Cancer therapeutics. In the course of our investigations to discover new CDK8 inhibitors, we designed and synthesized tricyclic pyrido[2,3-b][1,5]benzoxazepin-5(6H)-one derivatives, by introduction of chemical complexity in the multi-kinase inhibitor Sorafenib taking into account the flexibility of the P-loop motif of CDK8 protein observed after analysis of structural information of co-crystallized CDK8 inhibitors. In vitro evaluation of the inhibitory activity of the prepared compounds against CDK8 led us to identify compound 2 as the most potent inhibitor of the series (IC50 = 8.25 nM). Co-crystal studies and the remarkable selectivity profile of compound 2 are presented. Compound 2 showed moderate reduction of phosphorylation of CDK8 substrate STAT1 in cells, in line with other reported Type II CDK8 inhibitors. We propose herein an alternative to find a potential therapeutic use for this chemical series.

Keywords

CDK8; P-loop flexibility; Selectivity; Type II inhibitors; pyrido[2,3-b][1,5]benzoxazepin-5(6H)-one scaffold.

Figures
Products
  • Cat. No.
    Product Name
    Description
    Target
    Research Area
  • HY-151371
    CDK8 Inhibitor
    CDK