1. Cell Cycle/DNA Damage Epigenetics
  2. HDAC
  3. HDAC-IN-56

HDAC-IN-56 ((S)-17b) is an orally active class I histone deacetylase (HDAC) inhibitor with IC50 values of 56.0 ± 6.0, 90.0 ± 5.9, 422.2 ± 105.1, >10000 nM for HDAC1, HDAC2, HDAC3, and HDAC4-11, respectively. HDAC-IN-56 has potent inhibitory activity while strongly increasing intracellular levels of acetylhistone H3 and P21 and effectively inducing G1 cell cycle arrest and apoptosis.HDAC-IN-56 has antitumor activity .

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HDAC-IN-56 Chemical Structure

HDAC-IN-56 Chemical Structure

CAS No. : 2814571-89-4

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Description

HDAC-IN-56 ((S)-17b) is an orally active class I histone deacetylase (HDAC) inhibitor with IC50 values of 56.0 ± 6.0, 90.0 ± 5.9, 422.2 ± 105.1, >10000 nM for HDAC1, HDAC2, HDAC3, and HDAC4-11, respectively. HDAC-IN-56 has potent inhibitory activity while strongly increasing intracellular levels of acetylhistone H3 and P21 and effectively inducing G1 cell cycle arrest and apoptosis.HDAC-IN-56 has antitumor activity [1].

IC50 & Target

HDAC1

56.0 nM (IC50)

HDAC2

90.0 nM (IC50)

HDAC3

422.2 nM (IC50)

In Vitro

HDAC-IN-56 shows potent and selective inhibition against Class I HDACs 1, 2, and 3, better than that of MS-275 (HY-12163)[1].
HDAC-IN-56 (0.1 μM, 2 h) is metabolized in human, monkey, dog, rat and mouse hepatocytes with significant species differences and was stable in five species of hepatocytes[1].
HDAC-IN-56 (0.01-1 μM, 72 h) effectively induces G1 cell cycle arrest and apoptosis[1].
HDAC-IN-56 (0.01-1 μM, 72 h) treatment increases the intracellular level of acetyl-histone H3 and p21 simultaneously better than that of Tucidinostat (HY-109015) or MS-275 (HY-12163), which implied its strong class I histone deacetylase inhibition[1].
HDAC-IN-56 has an IC50 of 139.0 ± 8.0 nM for SKM-1[1].
HDAC-IN-56 shows potent and selective inhibition against Class I HDACs 1, 2, and 3, better than that of MS-275 (HY-12163)[1].
HDAC-IN-56 (0.1 μM, 2 h) is metabolized in human, monkey, dog, rat and mouse hepatocytes with significant species differences and was stable in five species of hepatocytes[1].
HDAC-IN-56 (0.01-1 μM, 72 h) effectively induces G1 cell cycle arrest and apoptosis[1].
HDAC-IN-56 (0.01-1 μM, 72 h) treatment increases the intracellular level of acetyl-histone H3 and p21 simultaneously better than that of Tucidinostat (HY-109015) or MS-275 (HY-12163), which implied its strong class I histone deacetylase inhibition[1].
HDAC-IN-56 has an IC50 of 139.0 ± 8.0 nM for SKM-1[1].
HDAC-IN-56 (compuond (S)-17b) Metabolic Stability in Hepatocytes of Five Species (mass spectrum peak area)[1]

HDAC-IN-56 (compuond (S)-17b) 五个物种的肝细胞中的代谢稳定性 (质谱峰面积)[1]

no. human monkey dog rat mouse
(S)-17b-120 min 132390 (299) 118399 (300) 133963 (347) 133098 (347) 143377 (349)
(S)-17b-0 h 129174 (293) 107142 (267) 150514 (395) 136550 (350) 156075 (392)

MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.

Cell Cycle Analysis[1]

Cell Line: SKM-1
Concentration: 0.01, 0.1, 1 μM
Incubation Time: 72 h
Result: Downregulated the expression of c-Myc and CDK4 at 0.1 μM, which is better than MS-275 (HY-12163) or Tucidinostat (HY-109015).

Apoptosis Analysis[1]

Cell Line: SKM-1
Concentration: 0.01, 0.1, 1 μM
Incubation Time: 72 h
Result: Triggered strong apoptosis as determined by Annexin V/PI staining, stronger than MS-275 (HY-12163) or Tucidinostat (HY-109015).

Western Blot Analysis[1]

Cell Line: SKM-1
Concentration: 0.01, 0.1, 1 μM
Incubation Time: 72 h
Result: Increased the intracellular level of acetyl-histone H3 and p21 simultaneously better than that of Tucidinostat (HY-109015) or MS-275 (HY-12163).
In Vivo

HDAC-IN-56 (10-80 mg/kg/d, p.o., one month) cause no significant change of body weight, even at high dose of 80 mg/kg per day, the mice can tolerate with the descended body weight compared with the control[1].
HDAC-IN-56 (SD: 10, 20 mg/kg ; ICR: 20, 40 mg/kg, p.o.) represent a favorable pharmacokinetic profile with an oral bioavailability of 47.7% in ICR mice and 39.5% in SD rat, respectively[1].
HDAC-IN-56 (20-60 mg/kg, p.o.) inhibit the tumor growth of MC38 cells in nude mice as expected, when inoculate in immunocompetent C57BL/6 mice show more significant tumor growth inhibition at the same doses, which implie that the immune system may be engaged and somehow activated gain stronger antitumor effect[1].
In vivo pharmacokinetics of HDAC-IN-56 (compuond (S)-17b) in ICR mice and SD rat[1]

HDAC-IN-56(compuond (S)-17b)在ICR小鼠和SD大鼠体内的药代动力学研究[1]

ICR mice SD rat
(S)-17b dose (mg/kg) CL (mL/min/kg) Vss (L/kg) T1/2(h) AUC0-t(h x ng/mL) Cmax (ng/mL) Tmax (h) F (%) dose (mg/kg) CL (mL/min/kg) Vss (L/kg) T1/2(h) AUC0-t(h x ng/mL) Cmax (ng/mL) Tmax (h) F (%)
iv 20 64.4 ± 10.3 5.3 ± 1.2 3.6 ± 0.3 5269 ± 924 10 34.3 ± 8.6 4.1 ± 0.8 1.5 ± 0.2 4935 ± 1068
po 40 2.5 ± 0.3 5031 ± 441 1963 ± 335 0.83 ± 0.29 47.7 20 2.3 ± 0.6 3895 ± 141 1086 ± 16 2.00 39.5

MedChemExpress (MCE) has not independently confirmed the accuracy of these methods. They are for reference only.

Animal Model: Male SD rats or ICR mice[1]
Dosage: 10, 20 mg/kg ; ICR: 20, 40 mg/kg
Administration: Male SD rats or ICR mice (n = 6) were fasted for 12 h before administration and remained fasting for 2 h. SD rats were received 10 and 20 mg/kg via intravenously injection (iv) and oral administration (po), respectively, and ICR mice were received 20 and 40 mg/kg via intravenously injection (iv) and oral administration (po), respectively.
Result: Epresented a favorable pharmacokinetic profile with an oral bioavailability of 47.7% in ICR mice and 39.5% in SD rat, respectively
Animal Model: SKM-1 or MC-38 cells xenograft model[1]
Dosage: 20, 40, 60 mg/kg
Administration: Oral gavage (p.o.).
Result: Inhibited the tumor growth of MC38 cells in nude mice.
Showed more significant tumor growth inhibition at the same doses, which implie that the immune system may be engaged and somehow activated HDAC-IN-56 to gain stronger antitumor effect.
Molecular Weight

485.55

Formula

C28H28FN5O2

CAS No.
SMILES

O=C1C=CC(C2=CC=C(C=C2)CN(C)C)=NN1[C@H](C3=CC=C(C=C3)C(NC4=C(N)C=C(C=C4)F)=O)C

Shipping

Room temperature in continental US; may vary elsewhere.

Storage

Please store the product under the recommended conditions in the Certificate of Analysis.

Purity & Documentation
References
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HDAC-IN-56
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