2. Academic Validation
  3. Roles of E2F family members in the diagnosis and prognosis of head and neck squamous cell carcinoma

Roles of E2F family members in the diagnosis and prognosis of head and neck squamous cell carcinoma

  • BMC Med Genomics. 2023 Feb 28;16(1):38. doi: 10.1186/s12920-023-01470-6.
Yaoxu Li 1,  Yinpei Huang 2,  Bing Li 3,  Kai Yang 4
Affiliations

Affiliations

  • 1 Department of Oral and Maxillofacial Surgery, The First Affiliated Hospital of Chongqing Medical University, No.1, Youyi Road, Yuzhong District, 400016, Chongqing, China.
  • 2 Department of Otorhinolaryngology, The First Affiliated Hospital of Chongqing Medical University, 400016, Chongqing, China.
  • 3 Department of Otorhinolaryngology, The First Affiliated Hospital of Chongqing Medical University, 400016, Chongqing, China. 1390658110@qq.com.
  • 4 Department of Oral and Maxillofacial Surgery, The First Affiliated Hospital of Chongqing Medical University, No.1, Youyi Road, Yuzhong District, 400016, Chongqing, China. cqfyyk@hotmail.com.
PMID: 36855110 DOI: 10.1186/s12920-023-01470-6
Abstract

Background: Head and neck squamous cell carcinoma (HNSCC) is the sixth most prevalent Cancer worldwide. E2Fs are a group of transcription factors involved in the carcinogenesis and progression of various cancers. However, the exact roles of each member of E2F family in the development and progression of HNSCC are still unknown.

Methods: RNASeq and clinical follow-up information were extracted from The Cancer Genome Atlas (TCGA). The expressions of E2Fs and their roles in HNSCC progression were explored using the R software and the cBioPortal database.

Results: Our results showed that the mRNA levels of E2Fs were significantly higher in HNSCC tumors than in normal tissues. E2F1, E2F3, E2F4, E2F6, and E2F7 were identified as reliable diagnostic markers. E2Fs (except for E2F3) expressions were closely related to the clinical features (excluding metastasis) of HNSCC. High E2F6 mRNA expression was an independent risk factor for the OS of female HNSCC patients. In addition, high E2F4 expression could lead to poor prognosis in HNSCC in both males and females, high expressions of E2F5, E2F6, and E2F7 were associated with poor OS of female HNSCC patients, while high E2F2 and E2F8 expressions were positively correlated with the OS of male HNSCC patients. Interestingly, E2Fs expressions had stronger associations with immune cell infiltrations in male HNSCC patients than in female HNSCC patients.

Conclusion: The expressions of E2Fs were found to be correlated with the progression of HNSCC. E2F1, E2F3, E2F4, E2F6, and E2F7 could be good diagnostic molecules for HNSCC. In addition, E2F6 was an independent risk factor for the prognosis of female HNSCC patients.

Keywords

Bioinformatics; E2Fs; HNSCC; TCGA; TME.

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