1. Gene
  2. TAF5 - TATA-box binding protein associated factor 5 Gene

TAF5 - TATA-box binding protein associated factor 5 Gene

Homo sapiens

Also known as TAF2D; TAFII100; TAFII-100; TAF(II)100

Gene ID: 6877 | Gene type: protein coding

About TAF5

Cytogenetic location: 10q24.33 Genomic coordinates (GRCh38): 10:103,367,976-103,389,065 (from NCBI)

This gene has 10 transcripts (splice variants), 208 orthologues and 1 paralogue. Broad expression in testis (RPKM 8.2), lymph node (RPKM 2.6) and 24 other tissues.

Summary

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes an integral subunit of TFIID associated with all transcriptionally competent forms of that complex. This subunit interacts strongly with two TFIID subunits that show similarity to histones H3 and H4, and it may participate in forming a nucleosome-like core in the TFIID complex. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]

TAF5 Products(2)

mRNA Protein Name
NM_006951.5 NP_008882.2 transcription initiation factor TFIID subunit 5 isoform 1
NM_139052.3 NP_620640.1 transcription initiation factor TFIID subunit 5 isoform 2
Gene Ontology
  • Molecular Function
  • Biological Process
  • Cellular Component
Molecular Function GO Annotation Evidence Reference Source
contributes to RNA polymerase II general transcription initiation factor activity IDA
IDA: Inferred from direct assay
9603525 GOA
enables RNA polymerase II general transcription initiation factor activity IMP
IMP: Inferred from mutant phenotype
9045704 GOA
enables identical protein binding IPI
IPI: Inferred from physical interaction
17227857 GOA
enables protein binding IPI
IPI: Inferred from physical interaction
9045704 GOA
Biological Process GO Annotation Evidence Reference Source
involved in DNA-templated transcription initiation IDA
IDA: Inferred from direct assay
9603525 GOA
involved in RNA polymerase II preinitiation complex assembly IPI
IPI: Inferred from physical interaction
27007846 GOA
involved in mRNA transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
17884155 GOA
involved in positive regulation of transcription initiation by RNA polymerase II IDA
IDA: Inferred from direct assay
17884155 GOA
involved in regulation of transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
9603525 GOA
involved in transcription initiation at RNA polymerase II promoter IDA
IDA: Inferred from direct assay
9045704 GOA
Cellular Component GO Annotation Evidence Reference Source
located in chromatin IDA
IDA: Inferred from direct assay
24289924 GOA
NOT located in nucleolus IDA
IDA: Inferred from direct assay
15637059 GOA
located in nucleus EXP
EXP: Inferred from Experiment
23332750 GOA
located in nucleus IDA
IDA: Inferred from direct assay
15637059 GOA
part of transcription factor TFIID complex IDA
IDA: Inferred from direct assay
9045704 GOA
part of transcription factor TFIID complex IPI
IPI: Inferred from physical interaction
23332750 GOA
part of transcription factor TFTC complex IDA
IDA: Inferred from direct assay
9603525 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

TAF5 Protein Structure

TFIID_NTD2

TFIID_NTD2: WD40 associated region in TFIID subunit, NTD2 domain (202 - 337)

WD40

WD40: WD domain, G-beta repeat (472 - 498)

WD40

WD40: WD domain, G-beta repeat (536 - 571)

WD40

WD40: WD domain, G-beta repeat (576 - 612)

WD40

WD40: WD domain, G-beta repeat (618 - 655)

WD40

WD40: WD domain, G-beta repeat (659 - 697)

WD40

WD40: WD domain, G-beta repeat (704 - 739)

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  • 800 a.a.
Protein Preferred Names Protein Names

transcription initiation factor TFIID subunit 5

TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa

TAF5 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method Reference
Intra
TAF5 Q15542 TAF9 Homo sapiens Q16594 23292512
Intra
TAF5 Q15542 TAF9 Homo sapiens Q16594 23292512
Intra
TAF5 Q15542 TAF6 Homo sapiens P49848
GMS
17355863
Intra
TAF5 Q15542 TAF9 Homo sapiens Q16594 17355863
Intra
TAF5 Q15542 TAF9 Homo sapiens Q16594
GMS
23292512
Intra
TAF5 Q15542 TAF6 Homo sapiens P49848 17355863
Intra
TAF5 Q15542 TAF6 Homo sapiens P49848 17355863
Intra
TAF5 Q15542 TAF9 Homo sapiens Q16594
GMS
17355863
Intra
TAF5 Q15542 TAF9 Homo sapiens Q16594 23292512
Intra
TAF5 Q15542 TAF9 Homo sapiens Q16594 17355863
Intra
TAF5 Q15542 TAF9 Homo sapiens Q16594 23292512
Cross: Cross-species interaction Intra: Intraspecies interaction

Orthologs Information

Species Symbol Source ID
Canis familiaris TAF5 VGNC VGNC:47083
Macaca mulatta TAF5 VGNC VGNC:78092
Mus musculus TAF5 MGD MGI:2442144
Felis catus TAF5 VGNC VGNC:65933
Rattus norvegicus TAF5 RGD RGD:1311332
Bos taurus TAF5 VGNC VGNC:35576