1. Gene
  2. TAF9 - TATA-box binding protein associated factor 9 Gene

TAF9 - TATA-box binding protein associated factor 9 Gene

Homo sapiens

Also known as TAF2G; TAFII31; TAFII32; MGC:5067; TAFII-31; TAFII-32; TAFIID32; STAF31/32

Gene ID: 6880 | Gene type: protein coding

About TAF9

Cytogenetic location: 5q13.2 Genomic coordinates (GRCh38): 5:69,364,743-69,369,824 (from NCBI)

This gene has 20 transcripts (splice variants), 1 gene allele, 204 orthologues and 1 paralogue. Broad expression in testis (RPKM 60.1), bone marrow (RPKM 34.1) and 25 other tissues.

Summary

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the smaller subunits of TFIID that binds to the basal transcription factor GTF2B as well as to several transcriptional activators such as p53 and VP16. In human, TAF9 and AK6 (GeneID: 102157402) are two distinct genes that share 5' exons. A similar but distinct gene (TAF9L) has been found on the X chromosome and a pseudogene has been identified on chromosome 19. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

TAF9 Products(2)

mRNA Protein Name
NM_001015892.2 NP_001015892.1 transcription initiation factor TFIID subunit 9
NM_003187.5 NP_003178.1 transcription initiation factor TFIID subunit 9
Gene Ontology
  • Molecular Function
  • Biological Process
  • Cellular Component
Molecular Function GO Annotation Evidence Reference Source
enables ATPase binding IPI
IPI: Inferred from physical interaction
17636026 GOA
enables C2H2 zinc finger domain binding IPI
IPI: Inferred from physical interaction
19251649 GOA
enables DNA binding IDA
IDA: Inferred from direct assay
15601843 GOA
enables DNA-binding transcription factor binding IPI
IPI: Inferred from physical interaction
9171108 GOA
contributes to histone acetyltransferase activity IDA
IDA: Inferred from direct assay
9674425 GOA
enables p53 binding IPI
IPI: Inferred from physical interaction
11278372 GOA
enables protein binding IPI
IPI: Inferred from physical interaction
7667268 GOA
enables transcription cis-regulatory region binding IDA
IDA: Inferred from direct assay
19251649 GOA
enables transcription coactivator activity IDA
IDA: Inferred from direct assay
11564863 GOA
enables transcription coactivator activity IMP
IMP: Inferred from mutant phenotype
11278372 GOA
Biological Process GO Annotation Evidence Reference Source
involved in RNA polymerase II preinitiation complex assembly IPI
IPI: Inferred from physical interaction
27007846 GOA
involved in box C/D snoRNP assembly IDA
IDA: Inferred from direct assay
17636026 GOA
involved in mRNA transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
17884155 GOA
involved in negative regulation of apoptotic process IMP
IMP: Inferred from mutant phenotype
15899866 GOA
involved in negative regulation of proteasomal ubiquitin-dependent protein catabolic process IDA
IDA: Inferred from direct assay
11278372 GOA
involved in positive regulation of response to cytokine stimulus IMP
IMP: Inferred from mutant phenotype
15489227 GOA
involved in positive regulation of transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
11278372 GOA
involved in positive regulation of transcription initiation by RNA polymerase II IDA
IDA: Inferred from direct assay
17884155 GOA
involved in protein stabilization IDA
IDA: Inferred from direct assay
15899866 GOA
involved in regulation of transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
9603525 GOA
involved in response to interleukin-1 IMP
IMP: Inferred from mutant phenotype
15489227 GOA
Cellular Component GO Annotation Evidence Reference Source
part of MLL1 complex IDA
IDA: Inferred from direct assay
15960975 GOA
part of SAGA complex IDA
IDA: Inferred from direct assay
9674425 GOA
located in nucleus EXP
EXP: Inferred from Experiment
23332750 GOA
located in nucleus IDA
IDA: Inferred from direct assay
11564863 GOA
part of pre-snoRNP complex IDA
IDA: Inferred from direct assay
17636026 GOA
part of transcription factor TFIID complex IDA
IDA: Inferred from direct assay
14580349 GOA
part of transcription factor TFIID complex IPI
IPI: Inferred from physical interaction
23332750 GOA
part of transcription factor TFTC complex IDA
IDA: Inferred from direct assay
15899866 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

TAF9 Protein Structure

TFIID-31kDa

TFIID-31kDa: Transcription initiation factor IID, 31kD subunit (2 - 130)

  • 0
  • 100
  • 200
  • 264 a.a.
Protein Preferred Names Protein Names

transcription initiation factor TFIID subunit 9

RNA polymerase II TBP-associated factor subunit G

TAF9 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method Reference
Cross
TAF9 Q16594 Klf1 Mus musculus P46099 19251649
Intra
TAF9 Q16594 KPNA1 Homo sapiens P52294 25416956
Intra
TAF9 Q16594 KPNA1 Homo sapiens P52294 25416956
Intra
TAF9 Q16594 KPNA1 Homo sapiens P52294 16713569
Intra
TAF9 Q16594 KPNA1 Homo sapiens P52294 25416956
Intra
TAF9 Q16594 KPNA6 Homo sapiens O60684 16713569
Intra
TAF9 Q16594 KPNA6 Homo sapiens O60684 32296183
Intra
TAF9 Q16594 KPNA6 Homo sapiens O60684 32296183
Intra
TAF9 Q16594 DRAP1 Homo sapiens Q14919 32296183
Intra
TAF9 Q16594 DRAP1 Homo sapiens Q14919
Y2H
21516116
Intra
TAF9 Q16594 DRAP1 Homo sapiens Q14919 16189514
Intra
TAF9 Q16594 DRAP1 Homo sapiens Q14919 25416956
Intra
TAF9 Q16594 DRAP1 Homo sapiens Q14919 25416956
Intra
TAF9 Q16594 DRAP1 Homo sapiens Q14919 16713569
Intra
TAF9 Q16594 DRAP1 Homo sapiens Q14919 32296183
Intra
TAF9 Q16594 TAF6L Homo sapiens Q9Y6J9 32296183
Intra
TAF9 Q16594 TAF6L Homo sapiens Q9Y6J9 25416956
Cross: Cross-species interaction Intra: Intraspecies interaction

Orthologs Information

Species Symbol Source ID
Rattus norvegicus TAF9 RGD RGD:727861
Mus musculus TAF9 MGD MGI:1888697
Canis familiaris TAF9 VGNC VGNC:47090
Bos taurus TAF9 VGNC VGNC:35582