1. Gene
  2. TAF4 - TATA-box binding protein associated factor 4 Gene

TAF4 - TATA-box binding protein associated factor 4 Gene

Homo sapiens

Also known as TAF2C; TAF4A; TAF2C1; TAFII130; TAFII135; TAFII-130; TAFII-135; TAF(II)130; TAF(II)135

Gene ID: 6874 | Gene type: protein coding

About TAF4

Cytogenetic location: 20q13.33 Genomic coordinates (GRCh38): 20:61,974,798-62,065,881 (from NCBI)

This gene has 10 transcripts (splice variants), 1 gene allele, 250 orthologues and 1 paralogue. Ubiquitous expression in testis (RPKM 7.8), ovary (RPKM 4.5) and 25 other tissues.

Summary

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the larger subunits of TFIID that has been shown to potentiate transcriptional activation by retinoic acid, thyroid hormone and vitamin D3 receptors. In addition, this subunit interacts with the transcription factor CREB, which has a glutamine-rich activation domain, and binds to Other proteins containing glutamine-rich regions. Aberrant binding to this subunit by proteins with expanded polyglutamine regions has been suggested as one of the pathogenetic mechanisms underlying a group of neurodegenerative disorders referred to as polyglutamine diseases. [provided by RefSeq, Jul 2008]

TAF4 Products(1)

mRNA Protein Name
NM_003185.4 NP_003176.2 transcription initiation factor TFIID subunit 4
Gene Ontology
  • Molecular Function
  • Biological Process
  • Cellular Component
Molecular Function GO Annotation Evidence Reference Source
contributes to RNA polymerase II general transcription initiation factor activity IDA
IDA: Inferred from direct assay
9603525 GOA
enables aryl hydrocarbon receptor binding IPI
IPI: Inferred from physical interaction
15641800 GOA
contributes to core promoter sequence-specific DNA binding IDA
IDA: Inferred from direct assay
15601843 GOA
enables protein binding IPI
IPI: Inferred from physical interaction
7729427 GOA
Biological Process GO Annotation Evidence Reference Source
involved in DNA-templated transcription initiation IDA
IDA: Inferred from direct assay
9603525 GOA
involved in RNA polymerase II preinitiation complex assembly IPI
IPI: Inferred from physical interaction
27007846 GOA
involved in mRNA transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
17884155 GOA
involved in positive regulation of transcription initiation by RNA polymerase II IDA
IDA: Inferred from direct assay
17884155 GOA
involved in regulation of transcription by RNA polymerase II IDA
IDA: Inferred from direct assay
9603525 GOA
involved in transcription initiation at RNA polymerase II promoter IDA
IDA: Inferred from direct assay
9603525 GOA
Cellular Component GO Annotation Evidence Reference Source
part of MLL1 complex IDA
IDA: Inferred from direct assay
15960975 GOA
located in chromatin IDA
IDA: Inferred from direct assay
24289924 GOA
located in nucleus EXP
EXP: Inferred from Experiment
23332750 GOA
part of protein-containing complex IMP
IMP: Inferred from mutant phenotype
15641800 GOA
part of transcription factor TFIID complex IDA
IDA: Inferred from direct assay
14580349 GOA
part of transcription factor TFIID complex IPI
IPI: Inferred from physical interaction
23332750 GOA
part of transcription factor TFTC complex IDA
IDA: Inferred from direct assay
9603525 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

TAF4 Protein Structure

TAFH

TAFH: NHR1 homology to TAF (591 - 683)

TAF4

TAF4: Transcription initiation factor TFIID component TAF4 family (834 - 1083)

  • 0
  • 200
  • 400
  • 600
  • 800
  • 1000
  • 1085 a.a.
Protein Preferred Names Protein Names

transcription initiation factor TFIID subunit 4

RNA polymerase II TBP-associated factor subunit C

TAF4 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method Reference
Intra
TAF4 O00268 TAF12 Homo sapiens Q16514-1
Pull Down
23292512
Intra
TAF4 O00268 TAF12 Homo sapiens Q16514-1
Density Sedimentation
23292512
Intra
TAF4 O00268 TAF12 Homo sapiens Q16514-1
Ion Exchange Chrom
23292512
Intra
TAF4 O00268 TAF12 Homo sapiens Q16514-1
GMS
23292512
Intra
TAF4 O00268 CREB3 Homo sapiens O43889
ITC
17483474
Intra
TAF4 O00268 CREB3 Homo sapiens O43889
Pull Down
17483474
Intra
TAF4 O00268 CREBZF Homo sapiens Q9NS37
Pull Down
17483474
Intra
TAF4 O00268 CREBZF Homo sapiens Q9NS37
ITC
17483474
Cross: Cross-species interaction Intra: Intraspecies interaction

Related Diseases

Diseases Alias
Ovarian Endometrioid Stromal Sarcoma
Ovary Sarcoma

Sarcoma Of Ovary

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Mus musculus TAF4 MGD MGI:2152346
Rattus norvegicus TAF4 RGD RGD:1588072
Bos taurus TAF4 VGNC VGNC:57029
Macaca mulatta TAF4 VGNC VGNC:98455
Canis familiaris TAF4 VGNC VGNC:54737
Felis catus TAF4 VGNC VGNC:81234