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  2. FUBP1 - far upstream element binding protein 1 Gene

FUBP1 - far upstream element binding protein 1 Gene

Homo sapiens

Also known as FBP; FUBP; hDH V

Gene ID: 8880 | Gene type: protein coding

About FUBP1

Cytogenetic location: 1p31.1 Genomic coordinates (GRCh38): 1:77,944,055-77,979,501 (from NCBI)

This gene has 15 transcripts (splice variants), 181 orthologues, 12 paralogues and is associated with 80 phenotypes. Ubiquitous expression in lymph node (RPKM 23.3), bone marrow (RPKM 20.3) and 25 other tissues.

Summary

The protein encoded by this gene is a single stranded DNA-binding protein that binds to multiple DNA elements, including the far upstream element (FUSE) located upstream of c-Myc. Binding to FUSE occurs on the non-coding strand, and is important to the regulation of c-Myc in undifferentiated cells. This protein contains three domains, an amphipathic helix N-terminal domain, a DNA-binding central domain, and a C-terminal transactivation domain that contains three tyrosine-rich motifs. The N-terminal domain is thought to repress the activity of the C-terminal domain. This protein is also thought to bind RNA, and contains 3'-5' helicase activity with in vitro activity on both DNA-DNA and RNA-RNA duplexes. Aberrant expression of this gene has been found in malignant tissues, and this gene is important to neural system and lung development. Binding of this protein to viral RNA is thought to play a role in several viral diseases, including hepatitis C and hand, foot and mouth disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]

FUBP1 Products(6)

mRNA Protein Name
NM_001303433.2 NP_001290362.1 far upstream element-binding protein 1 isoform 1
NM_001376055.1 NP_001362984.1 far upstream element-binding protein 1 isoform 3
NM_001376056.1 NP_001362985.1 far upstream element-binding protein 1 isoform 4
NM_001376057.1 NP_001362986.1 far upstream element-binding protein 1 isoform 5
NM_001410804.1 NP_001397733.1 far upstream element-binding protein 1 isoform 6
NM_003902.5 NP_003893.2 far upstream element-binding protein 1 isoform 2
Gene Ontology
  • Molecular Function
  • Biological Process
  • Cellular Component
Molecular Function GO Annotation Evidence Reference Source
enables protein binding IPI
IPI: Inferred from physical interaction
20711187 GOA
Biological Process GO Annotation Evidence Reference Source
involved in positive regulation of gene expression IDA
IDA: Inferred from direct assay
19087307 GOA
Cellular Component GO Annotation Evidence Reference Source
located in nucleus IDA
IDA: Inferred from direct assay
19087307 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

FUBP1 Protein Structure

KH_1

KH_1: KH domain (102 - 164)

KH_1

KH_1: KH domain (188 - 251)

KH_1

KH_1: KH domain (280 - 339)

KH_1

KH_1: KH domain (380 - 443)

DUF1897

DUF1897: Domain of unknown function (DUF1897) (573 - 595)

DUF1897

DUF1897: Domain of unknown function (DUF1897) (601 - 632)

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  • 644 a.a.
Protein Preferred Names Protein Names

far upstream element-binding protein 1

DNA helicase V

Related Diseases

Diseases Alias
Hand, Foot And Mouth Disease

Vesicular Stomatitis And Exanthem

Childhood Oligodendroglioma

Pediatric Oligodendroglioma

Oligodendroglioma, Childhood

Oligodendroglioma

Oligodendroglial Neoplasm

Oligodendroglial Tumor

Oligodendroglial Tumors

Well Differentiated Oligodendroglioma

Temporal Lobe Neoplasm

Neoplasm Of Temporal Lobe

Malignant Neoplasm Of Temporal Lobe

Tumor Of Temporal Lobe

Adult Oligodendroglioma

Adult Brain Oligodendroglioma

Grade Ii Adult Oligodendroglial Tumor

Oligodendroglioma, Adult

Mixed Glioma

Mixed Gliomas

Mixed Neuroglial Tumor

Glioma

Mouth Disease

Mouth Diseases

Mouth Disorders

Chordoid Glioma

Chordoid Glioma Of The Third Ventricle

Brain Glioma

Lower Grade Glioma

Intracranial Glioma

Glioma Nos

Diffuse Astrocytoma

Diffuse Astrocytoma, Low Grade

Who Grade Ii Astrocytoma

Fibrillary Astrocytoma

Gemistocytic Astrocytoma

Low-Grade Diffuse Astrocytoma

Protoplasmic Astrocytoma

Anaplastic Oligodendroglioma
Low Grade Glioma

Benign Glioma

Central Nervous System Benign Neoplasm

Benign Neoplasm Of The Central Nervous System

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Bos taurus FUBP1 VGNC VGNC:55193
Felis catus FUBP1 VGNC VGNC:80212
Macaca mulatta FUBP1 VGNC VGNC:99956
Mus musculus FUBP1 MGD MGI:1196294
Rattus norvegicus FUBP1 RGD RGD:1591892
Others FUBP1 NCBI