1. Gene
  2. SMARCC1 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 Gene

SMARCC1 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 Gene

Homo sapiens

Also known as Rsc8; SRG3; SWI3; BAF155; CRACC1

Gene ID: 6599 | Gene type: protein coding

About SMARCC1

Cytogenetic location: 3p21.31 Genomic coordinates (GRCh38): 3:47,585,269-47,781,893 (from NCBI)

This gene has 8 transcripts (splice variants), 234 orthologues and 3 paralogues. Ubiquitous expression in testis (RPKM 18.4), endometrium (RPKM 15.8) and 25 other tissues.

Summary

The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and contains a predicted leucine zipper motif typical of many transcription factors. [provided by RefSeq, Jul 2008]

SMARCC1 Products(1)

mRNA Protein Name
NM_003074.4 NP_003065.3 SWI/SNF complex subunit SMARCC1
Gene Ontology
  • Molecular Function
  • Biological Process
  • Cellular Component
Molecular Function GO Annotation Evidence Reference Source
enables protein binding IPI
IPI: Inferred from physical interaction
9891079 GOA
Biological Process GO Annotation Evidence Reference Source
involved in chromatin remodeling IDA
IDA: Inferred from direct assay
10078207 GOA
involved in nucleosome disassembly IDA
IDA: Inferred from direct assay
8895581 GOA
involved in positive regulation of DNA-templated transcription IDA
IDA: Inferred from direct assay
11018012 GOA
Cellular Component GO Annotation Evidence Reference Source
part of SWI/SNF complex IDA
IDA: Inferred from direct assay
8804307 GOA
located in cytoplasm IDA
IDA: Inferred from direct assay
28753627 GOA
located in nucleus IDA
IDA: Inferred from direct assay
28753627 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

SMARCC1 Protein Structure

SWIRM

SWIRM: SWIRM domain (450 - 537)

Myb_DNA-binding

Myb_DNA-binding: Myb-like DNA-binding domain (622 - 663)

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  • 1000
  • 1105 a.a.
Protein Preferred Names Protein Names

SWI/SNF complex subunit SMARCC1

BRG1-associated factor 155

SMARCC1 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method Reference
Intra
SMARCC1 Q92922 ADAMTSL4 Homo sapiens Q6UY14-3
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 ADAMTSL4 Homo sapiens Q6UY14-3
Validated Y2H
25416956
Intra
SMARCC1 Q92922 ADAMTSL4 Homo sapiens Q6UY14-3
Y2H Array
25416956
Intra
SMARCC1 Q92922 ADAMTSL4 Homo sapiens Q6UY14-3
Y2H Array
32296183
Intra
SMARCC1 Q92922 GSTO2 Homo sapiens Q9H4Y5
Validated Y2H
32296183
Intra
SMARCC1 Q92922 GSTO2 Homo sapiens Q9H4Y5
Y2H Array
32296183
Intra
SMARCC1 Q92922 GSTO2 Homo sapiens Q9H4Y5
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP13-3 Homo sapiens Q3SY46
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP13-3 Homo sapiens Q3SY46
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 SPATA12 Homo sapiens Q7Z6I5
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 SPATA12 Homo sapiens Q7Z6I5
Y2H Array
32296183
Intra
SMARCC1 Q92922 VGLL3 Homo sapiens A8MV65-2
Y2H Array
32296183
Intra
SMARCC1 Q92922 VGLL3 Homo sapiens A8MV65-2
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP6-2 Homo sapiens Q3LI66
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP6-2 Homo sapiens Q3LI66
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 UFSP1 Homo sapiens Q6NVU6
Y2H Array
32296183
Intra
SMARCC1 Q92922 UFSP1 Homo sapiens Q6NVU6
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP6-1 Homo sapiens Q3LI64
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP6-1 Homo sapiens Q3LI64
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP19-2 Homo sapiens Q3LHN2
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP19-2 Homo sapiens Q3LHN2
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 SLC15A2 Homo sapiens Q16348
Y2H Array
32296183
Intra
SMARCC1 Q92922 SLC15A2 Homo sapiens Q16348
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 PPIP5K2 Homo sapiens O43314-2
Y2H Array
32296183
Intra
SMARCC1 Q92922 PPIP5K2 Homo sapiens O43314-2
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 LRP2BP Homo sapiens Q9P2M1
Validated Y2H
32296183
Intra
SMARCC1 Q92922 LRP2BP Homo sapiens Q9P2M1
Y2H Array
32296183
Intra
SMARCC1 Q92922 LRP2BP Homo sapiens Q9P2M1
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP7-1 Homo sapiens Q8IUC3
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP7-1 Homo sapiens Q8IUC3
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP21-2 Homo sapiens Q3LI59
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP21-2 Homo sapiens Q3LI59
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP6-3 Homo sapiens Q3LI67
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP6-3 Homo sapiens Q3LI67
Y2H Array
32296183
Intra
SMARCC1 Q92922 CARM1 Homo sapiens Q86X55
Methyltransferase Ass
24434208
Intra
SMARCC1 Q92922 CARM1 Homo sapiens Q86X55
Anti Bait CoIP
24434208
Intra
SMARCC1 Q92922 PTH1R Homo sapiens Q03431
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 PTH1R Homo sapiens Q03431
Y2H Array
32296183
Intra
SMARCC1 Q92922 RELB Homo sapiens Q01201
TAP
14743216
Intra
SMARCC1 Q92922 SMARCD1 Homo sapiens Q96GM5
Anti Tag CoIP
35271311
Intra
SMARCC1 Q92922 SMARCD1 Homo sapiens Q96GM5
TAP
24981860
Intra
SMARCC1 Q92922 SMARCD1 Homo sapiens Q96GM5
Anti Bait CoIP
24421395
Intra
SMARCC1 Q92922 SMARCD1 Homo sapiens Q96GM5
Anti Bait CoIP
24434208
Intra
SMARCC1 Q92922 GLRX3 Homo sapiens O76003
Y2H Array
32296183
Intra
SMARCC1 Q92922 GLRX3 Homo sapiens O76003
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 CYSRT1 Homo sapiens A8MQ03
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 CYSRT1 Homo sapiens A8MQ03
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP26-1 Homo sapiens Q6PEX3
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP26-1 Homo sapiens Q6PEX3
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP3-3 Homo sapiens Q9BYR6
Validated Y2H
32296183
Intra
SMARCC1 Q92922 KRTAP3-3 Homo sapiens Q9BYR6
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP3-3 Homo sapiens Q9BYR6
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 TRIM42 Homo sapiens Q8IWZ5
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 TRIM42 Homo sapiens Q8IWZ5
Y2H Array
32296183
Intra
SMARCC1 Q92922 CIDEB Homo sapiens Q9UHD4
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 CIDEB Homo sapiens Q9UHD4
Validated Y2H
32296183
Intra
SMARCC1 Q92922 CIDEB Homo sapiens Q9UHD4
Y2H Array
32296183
Intra
SMARCC1 Q92922 PLSCR1 Homo sapiens O15162
Validated Y2H
25416956
Intra
SMARCC1 Q92922 PLSCR1 Homo sapiens O15162
Y2H Array
25416956
Intra
SMARCC1 Q92922 OTX1 Homo sapiens P32242
Y2H Prey Pooling
25416956
Intra
SMARCC1 Q92922 OTX1 Homo sapiens P32242
Y2H Array
25416956
Intra
SMARCC1 Q92922 ZNF581 Homo sapiens Q9P0T4
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 ZNF581 Homo sapiens Q9P0T4
Validated Y2H
32296183
Intra
SMARCC1 Q92922 ZNF581 Homo sapiens Q9P0T4
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP3-2 Homo sapiens Q9BYR7
Y2H Array
32296183
Intra
SMARCC1 Q92922 KRTAP3-2 Homo sapiens Q9BYR7
Validated Y2H
32296183
Intra
SMARCC1 Q92922 CFP Homo sapiens P27918
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 CFP Homo sapiens P27918
Y2H Array
32296183
Intra
SMARCC1 Q92922 ASCL1 Homo sapiens P50553
Anti Bait CoIP
36931659
Intra
SMARCC1 Q92922 KRTAP3-1 Homo sapiens Q9BYR8
Validated Y2H
32296183
Intra
SMARCC1 Q92922 KRTAP3-1 Homo sapiens Q9BYR8
Y2H Prey Pooling
32296183
Intra
SMARCC1 Q92922 KRTAP3-1 Homo sapiens Q9BYR8
Y2H Array
32296183
Cross: Cross-species interaction Intra: Intraspecies interaction

SMARCC1 Antibodies

Cat. No. Product Name Application Reactivity
HY-P81308 SMARCC1 Antibody (YA1046) WB Human
HY-P81308A SMARCC1 Antibody (YA1047) WB, ICC/IF, IP, FC Human, Rat

Related Diseases

Diseases Alias
Congenital Hydrocephalus

Hydrocephalus

Hydrocephalus Adverse Event

Hydrocephalus, Nonsyndromic, Autosomal Recessive 1

Hydrocephalus In Newborn

Congenital Hydrocephaly

Neurilemmomatosis

Schwannomatosis

Neurofibromatosis Type 3

Nf3

Neurilemmomatosis Congenital Cutaneous

Neurinomatosis

Congenital Cutaneous Neurilemmomatosis

Multiple Neurilemmomas

Multiple Schwannomas

Neurilemmomatosis, Congenital Cutaneous

Schwannomatosis 1

Neurofibromatosis 3

Mixed Central And Peripheral Neurofibromatosis

Nf3 - [Neurofibromatosis Type 3]

Rhabdoid Cancer

Rhabdoid Tumor

Malignant Rhabdoid Tumor

Malignant Rhabdoid Tumour

Rhabdoid Sarcoma

Rhabdoid Tumor Predisposition Syndrome 1

Rhabdoid Tumor Predisposition Syndrome 2

Atypical Teratoid Rhabdoid Tumor

Brain Tumor, Posterior Fossa, Of Infancy, Familial

Atypical Teratoid/Rhabdoid Tumor

Kidney Rhabdoid Cancer

Rhabdoid Tumor Of The Kidney

Kidney Rhabdoid Tumor

Renal Rhabdoid Tumor

Clark-Baraitser Syndrome

CLABARS

Baraitser Syndrome

Autosomal Dominant Intellectual Disability 49

Mental Retardation, Autosomal Dominant 49, Formerly

Mrd49, Formerly

Intellectual Developmental Disorder, Autosomal Dominant 49

Autosomal Dominant Mental Retardation 49

Intellectual Disability, Tall Stature, Obesity, Macrocephaly And Typical Facial Features

Mrd49

Progeria Short Stature Pigmented Nevi

Autosomal Dominant Intellectual Developmental Disorder

Autosomal Dominant Mental Retardation

Autosomal Dominant Non-Syndromic Mental Retardation

Autosomal Dominant Non-Syndromic Intellectual Disability

Mental Retardation, Autosomal Dominant

Hydrocephalus

Hydrocephalus, Nonsyndromic, Autosomal Recessive

Hydrocephalus, X-Linked

Hydrocephalus Adverse Event

Hydrocephaly Nos

Ovarian Clear Cell Carcinoma

Clear-Cell Ovarian Carcinoma

Atypical Teratoid Rhabdoid Tumor

Rhabdoid Tumor Predisposition Syndrome

Rtps

Atypical Teratoid/Rhabdoid Tumor

Rhabdoid Predisposition Syndrome

Familial Posterior Fossa Brain Tumor Of Infancy

Familial Rhabdoid Tumor

At/Rt

Atypical Teratoid Rhabdoid Tumour

Atypical Teratoid/Rhabdoid Tumour

Rhabdoid Tumor Of The Cns

Rhabdoid Tumour Of The Cns

Familial Posterior Fossa Brain Tumor Syndrome

Hereditary Swi/Snf Deficiency Syndrome

Atrt

Coffin-Siris Syndrome 1

Coffin-Siris Syndrome

Fifth Digit Syndrome

Css

CSS1

Mrd12

Mental Retardation, Autosomal Dominant 12

Hhid

Dwarfism-Onychodysplasia

Hypertrichosis, Hyperkeratosis, Mental Retardation, And Distinctive Facial Features

Autosomal Dominant Mental Retardation 12

Short Stature-Onychodysplasia.

Intellectual Disability With Absent Fifth Fingernail And Terminal Phalanx

Mental Retardation With Hypoplastic Fifth Fingernails And Toenails

Short Stature-Onychodysplasia

Coffin-Siris Syndrome, Type 1

Mental Retardation, Autosomal Dominant, Type 12

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Felis catus SMARCC1 VGNC VGNC:65469
Macaca mulatta SMARCC1 VGNC VGNC:84075
Bos taurus SMARCC1 VGNC VGNC:58414
Canis familiaris SMARCC1 VGNC VGNC:46535
Rattus norvegicus SMARCC1 RGD RGD:1304850
Mus musculus SMARCC1 MGD MGI:1203524