1. Gene
  2. TBX6 - T-box transcription factor 6 Gene

TBX6 - T-box transcription factor 6 Gene

Homo sapiens

Also known as SCDO5

Gene ID: 6911 | Gene type: protein coding

About TBX6

Cytogenetic location: 16p11.2 Genomic coordinates (GRCh38): 16:30,085,793-30,091,924 (from NCBI)

This gene has 4 transcripts (splice variants), 198 orthologues, 16 paralogues and is associated with 2 phenotypes. Ubiquitous expression in stomach (RPKM 1.7), urinary bladder (RPKM 1.0) and 23 other tissues.

Summary

This gene is a member of a phylogenetically conserved family of genes that share a common DNA-binding domain, the T-box. T-box genes encode transcription factors involved in the regulation of developmental processes. Knockout studies in mice indicate that this gene is important for specification of paraxial mesoderm structures. [provided by RefSeq, Aug 2008]

TBX6 Products(1)

mRNA Protein Name
NM_004608.4 NP_004599.2 T-box transcription factor TBX6
Gene Ontology
  • Molecular Function
Molecular Function GO Annotation Evidence Reference Source
enables protein binding IPI
IPI: Inferred from physical interaction
24722188 GOA
enables sequence-specific double-stranded DNA binding IDA
IDA: Inferred from direct assay
28473536 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

TBX6 Protein Structure

T-box

T-box: T-box (93 - 274)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 436 a.a.
Protein Preferred Names Protein Names

T-box transcription factor TBX6

T-box 6

TBX6 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method Reference
Intra
TBX6 O95947 TBX15 Homo sapiens Q96SF7
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 TBX15 Homo sapiens Q96SF7
Validated Y2H
32296183
Intra
TBX6 O95947 TBX15 Homo sapiens Q96SF7
Y2H Array
32296183
Intra
TBX6 O95947 KRTAP11-1 Homo sapiens Q8IUC1
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 KRTAP11-1 Homo sapiens Q8IUC1
Validated Y2H
32296183
Intra
TBX6 O95947 KRTAP11-1 Homo sapiens Q8IUC1
Y2H Array
32296183
Intra
TBX6 O95947 UQCRC1 Homo sapiens P31930
Y2H Array
32814053
Intra
TBX6 O95947 UQCRC1 Homo sapiens P31930
Validated Y2H
32814053
Intra
TBX6 O95947 UQCRC1 Homo sapiens P31930
Y2H Pooling
32814053
Intra
TBX6 O95947 TLE5 Homo sapiens Q08117-2
Y2H Array
32296183
Intra
TBX6 O95947 TLE5 Homo sapiens Q08117-2
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 TLE5 Homo sapiens Q08117-2
Validated Y2H
32296183
Intra
TBX6 O95947 KRTAP6-2 Homo sapiens Q3LI66
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 KRTAP6-2 Homo sapiens Q3LI66
Validated Y2H
32296183
Intra
TBX6 O95947 KRTAP6-2 Homo sapiens Q3LI66
Y2H Array
32296183
Intra
TBX6 O95947 USP54 Homo sapiens Q70EL1-9
Y2H Array
32296183
Intra
TBX6 O95947 USP54 Homo sapiens Q70EL1-9
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 USP54 Homo sapiens Q70EL1-9
Validated Y2H
32296183
Intra
TBX6 O95947 ACTMAP Homo sapiens Q5BKX5-3
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 ACTMAP Homo sapiens Q5BKX5-3
Validated Y2H
32296183
Intra
TBX6 O95947 ACTMAP Homo sapiens Q5BKX5-3
Y2H Array
32296183
Intra
TBX6 O95947 POU6F2 Homo sapiens P78424
Validated Y2H
32296183
Intra
TBX6 O95947 POU6F2 Homo sapiens P78424
Y2H Array
32296183
Intra
TBX6 O95947 POU6F2 Homo sapiens P78424
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 TBX19 Homo sapiens O60806
Y2H Array
32296183
Intra
TBX6 O95947 TBX19 Homo sapiens O60806
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 PRR20D Homo sapiens P86480
Validated Y2H
32296183
Intra
TBX6 O95947 PRR20D Homo sapiens P86480
Y2H Array
32296183
Intra
TBX6 O95947 PRR20D Homo sapiens P86480
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 TSC1 Homo sapiens Q86WV8
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 TSC1 Homo sapiens Q86WV8
Y2H Array
32296183
Intra
TBX6 O95947 TSC1 Homo sapiens Q86WV8
Validated Y2H
32296183
Intra
TBX6 O95947 C10orf55 Homo sapiens Q5SWW7
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 C10orf55 Homo sapiens Q5SWW7
Validated Y2H
32296183
Intra
TBX6 O95947 C10orf55 Homo sapiens Q5SWW7
Y2H Array
32296183
Intra
TBX6 O95947 LAMP2 Homo sapiens P13473-2
Y2H Pooling
32814053
Intra
TBX6 O95947 LAMP2 Homo sapiens P13473-2
Validated Y2H
32814053
Intra
TBX6 O95947 LAMP2 Homo sapiens P13473-2
Y2H Array
32814053
Intra
TBX6 O95947 KRTAP6-3 Homo sapiens Q3LI67
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 KRTAP6-3 Homo sapiens Q3LI67
Y2H Array
32296183
Intra
TBX6 O95947 TCP11L1 Homo sapiens Q9NUJ3
Validated Y2H
32296183
Intra
TBX6 O95947 TCP11L1 Homo sapiens Q9NUJ3
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 TCP11L1 Homo sapiens Q9NUJ3
Y2H Array
32296183
Intra
TBX6 O95947 CYSRT1 Homo sapiens A8MQ03
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 CYSRT1 Homo sapiens A8MQ03
Y2H Array
32296183
Intra
TBX6 O95947 HSFY1 Homo sapiens Q96LI6
Y2H Prey Pooling
25416956
Intra
TBX6 O95947 HSFY1 Homo sapiens Q96LI6
Y2H Array
24722188
Intra
TBX6 O95947 HSFY1 Homo sapiens Q96LI6
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 HSFY1 Homo sapiens Q96LI6
Validated Y2H
32296183
Intra
TBX6 O95947 HSFY1 Homo sapiens Q96LI6
Y2H Array
25416956
Intra
TBX6 O95947 HSFY1 Homo sapiens Q96LI6
Y2H Array
32296183
Intra
TBX6 O95947 MAGED1 Homo sapiens Q9Y5V3
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 MAGED1 Homo sapiens Q9Y5V3
Validated Y2H
32296183
Intra
TBX6 O95947 MAGED1 Homo sapiens Q9Y5V3
Y2H Array
32296183
Intra
TBX6 O95947 DAZAP2 Homo sapiens Q15038
Y2H Array
32296183
Intra
TBX6 O95947 DAZAP2 Homo sapiens Q15038
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 DAZAP2 Homo sapiens Q15038
Validated Y2H
32296183
Intra
TBX6 O95947 PLA2G10 Homo sapiens O15496
Y2H Array
32296183
Intra
TBX6 O95947 PLA2G10 Homo sapiens O15496
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 RBPMS Homo sapiens Q93062
Validated Y2H
25416956
Intra
TBX6 O95947 RBPMS Homo sapiens Q93062-3
Y2H Array
24722188
Intra
TBX6 O95947 RBPMS Homo sapiens Q93062-3
Validated Y2H
32296183
Intra
TBX6 O95947 RBPMS Homo sapiens Q93062-3
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 RBPMS Homo sapiens Q93062-3
Y2H Array
32296183
Intra
TBX6 O95947 UBQLN1 Homo sapiens Q9UMX0
Validated Y2H
32814053
Intra
TBX6 O95947 UBQLN1 Homo sapiens Q9UMX0
Y2H Pooling
32814053
Intra
TBX6 O95947 UBQLN1 Homo sapiens Q9UMX0
Y2H Array
32814053
Intra
TBX6 O95947 CRX Homo sapiens O43186
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 CRX Homo sapiens O43186
Y2H Array
32296183
Intra
TBX6 O95947 INTS11 Homo sapiens Q5TA45
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 INTS11 Homo sapiens Q5TA45
Validated Y2H
32296183
Intra
TBX6 O95947 INTS11 Homo sapiens Q5TA45
Y2H Array
32296183
Intra
TBX6 O95947 TENT5B Homo sapiens Q96A09
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 TENT5B Homo sapiens Q96A09
Validated Y2H
32296183
Intra
TBX6 O95947 METTL27 Homo sapiens Q8N6F8
Validated Y2H
32296183
Intra
TBX6 O95947 METTL27 Homo sapiens Q8N6F8
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 METTL27 Homo sapiens Q8N6F8
Y2H Array
32296183
Intra
TBX6 O95947 POU2AF1 Homo sapiens Q16633
Validated Y2H
32296183
Intra
TBX6 O95947 POU2AF1 Homo sapiens Q16633
Y2H Array
32296183
Intra
TBX6 O95947 POU2AF1 Homo sapiens Q16633
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 C1orf94 Homo sapiens Q6P1W5
Y2H Array
24722188
Intra
TBX6 O95947 KLHDC7B Homo sapiens Q96G42
Y2H Array
32296183
Intra
TBX6 O95947 KLHDC7B Homo sapiens Q96G42
Validated Y2H
32296183
Intra
TBX6 O95947 KLHDC7B Homo sapiens Q96G42
Y2H Prey Pooling
32296183
Intra
TBX6 O95947 TOX4 Homo sapiens O94842
Y2H Array
25416956
Intra
TBX6 O95947 TOX4 Homo sapiens O94842
Y2H Array
32296183
Intra
TBX6 O95947 TOX4 Homo sapiens O94842
Y2H Array
24722188
Intra
TBX6 O95947 TOX4 Homo sapiens O94842
Y2H Prey Pooling
25416956
Intra
TBX6 O95947 TOX4 Homo sapiens O94842
Validated Y2H
25416956
Intra
TBX6 O95947 TOX4 Homo sapiens O94842
Y2H Prey Pooling
32296183
Cross: Cross-species interaction Intra: Intraspecies interaction

Related Diseases

Diseases Alias
Spondylocostal Dysostosis 5

Spondylothoracic Dysostosis

SCDO5

Jarcho-Levin Syndrome

Scoliosis, Congenital, With Or Without Rib Anomalies

Tacs

Spondylocostal Dysplasia

Costovertebral Segmentation Anomalies

Spondylocostal Dysostosis 1

Spondylocostal Dysostosis

Spondylothoracic Dysplasia

Scdo1

Spondylocostal Dysostosis 1 Autosomal Recessive

Costovertebral Dysplasia

Scdo

Std

Autosomal Dominant Spondylocostal Dysostosis

Autosomal Dominant Spondylocostal Dysplasia

Doid:0112363

Spondylocostal Dysostosis 4, Autosomal Dominant

Scoliosis
Spondylocostal Dysostosis

Jarcho-Levin Syndrome

Costovertebral Dysplasia

Spondylothoracic Dysostosis

Spondylothoracic Dysplasia

Scdo

Dysostosis, Spondylocostal

Dysostosis

Dysostoses

Mullerian Duct Aplasia, Unilateral Renal Agenesis, And Cervicothoracic Somite Anomalies

Murcs Association

Mayer-Rokitansky-Kuster-Hauser Syndrome Type 2

Mrkh Syndrome Type 2

Mayer-Rokitansky-Küster-Hauser Syndrome Type 2

MURCS

Klippel-Feil Deformity, Conductive Deafness, And Absent Vagina

Atypical Mrkh Syndrome

Mullerian Duct Aplasia-Renal Dysplasia-Cervical Somite Anomalies Syndrome

Mayer-Rokitansky-Kuster-Hauser Syndrome, Type Ii

Mrkh, Type Ii

Mullerian Duct Aplasia, Unilateral Renal Aplasia, And Cervicothoracic Somite Dysplasia

Klippel-Feil Deformity - Conductive Deafness - Absent Vagina

Müllerian Aplasia - Renal Aplasia - Cervicothoracic Somite Dysplasia

Mullerian Aplasia And Hyperandrogenism

Mullerian Duct Failure And Hyperandrogenism

Wnt4 Deficiency

Müllerian Aplasia And Hyperandrogenism

Biason-Lauber Syndrome

Mayer-Rokitansky-Küster-Hauser-Biason-Lauber Syndrome

Mayer-Rokitansky-Küster-Hauser-Like Syndrome

Müllerian Duct Failure

Wnt4 Müllerian Aplasia

Wnt4 Müllerian Aplasia And Ovarian Dysfunction

MULLAPL

Wnt4 Mullerian Aplasia And Ovarian Dysfunction

Mayer-Rokitansky-Kuster-Hauser Syndrome

Mrkh Syndrome

Rokitansky Syndrome

Mullerian Aplasia

Mrkh Anomaly

Congenital Absence Of Uterus And Vagina

Congenital Absence Of The Uterus And Vagina

Genital Renal Ear Syndrome

Mayer-Rokitansky-Küster-Hauser Syndrome

Mullerian Dysgenesis

Müllerian Agenesis

Rokitansky Kuster Hauser Syndrome

MRKH

Mullerian Aplasia/Dysgenesis

Von Mayer-Rokitansky-Kuster Anomaly

Mrk Anomaly

Uterus Bipartitus Solidus Rudimentarius Cum Vagina Solida

Cauv

Mullerian Agenesis

Aplasia Of The Mullerian Ducts

Mullerian Duct Failure

Müllerian Aplasia

Rokitansky-Kuster-Hauser Syndrome

RKH SYNDROME

Spondylocostal Dysostosis 4, Autosomal Recessive

SCDO4

Spondylocostal Dysostosis 4

Autosomal Recessive Spondylocostal Dysostosis 4

Doid:0112364

Dysostosis, Spondylocostal, Autosomal Recessive, Type 4

Arthrogryposis, Distal, Type 2b3

DA2B3

Distal Arthrogryposis Type 2b3

Arthrogryposis, Distal, 2b3

Sacral Defect With Anterior Meningocele

Caudal Regression Syndrome

Caudal Regression Sequence

Sacral Agenesis

Caudal Dysgenesis Syndrome

SDAM

Caudal Dysplasia Sequence

Caudal Dysplasia

Sacral Agenesis Syndrome

Sacral Regression Syndrome

Sacral Defect And Anterior Sacral Meningocele

Rudd Klimek Syndrome

Sirenomelia

Thrombocytopenia-Absent Radius Syndrome

Tar Syndrome

Radial Aplasia-Thrombocytopenia Syndrome

Absent Radii And Thrombocytopenia

TAR

Chromosome 1q21.1 Deletion Syndrome, 200-Kb

Thrombocytopenia Absent Radius Syndrome

Thrombocytopenia Absent Radii

Chromosome 1q21.1 Deletion Syndrome

Thrombocytopenia With Absent Radii Syndrome

Radial Aplasia-Amegakaryocytic Thrombocytopenia

Bone Structure Disease
Spondylocostal Dysostosis 1, Autosomal Recessive

Jarcho-Levin Syndrome

SCDO1

Vertebral Anomalies

Spondylothoracic Dysplasia

Costovertebral Dysplasia

Spondylothoracic Dysostosis

Spondylocostal Dysostosis 1

Autosomal Recessive Spondylocostal Dysostosis 1

Spondylocostal Dysostosis, Autosomal Recessive, 1

Doid:0112365

Dysostosis, Spondylocostal, Autosomal Recessive, Type 1

Vacterl Association, X-Linked, With Or Without Hydrocephalus

VACTERLX

X-Linked Vacterl Association

Vacterl-H, X-Linked

Vacterl Association, X-Linked

Vacterl Association, X-Linked With Or Without Hydrocephalus

Vacterl Association X-Linked With Or Without Hydrocephalus

Vacterl Syndrome

Vertebral Anal Tracheoesophageal Esophageal Radial Anomalies

X-Linked Vacterl-H

Vacterl Association

Vacterl Association With Hydrocephalus

Ulnar-Mammary Syndrome

Schinzel Syndrome

UMS

Pallister Ulnar-Mammary Syndrome

Ulnar-Mammary Syndrome Of Pallister

Spondylolysis

Acquired Spondylolysis

Pulmonary Interstitial Emphysema
Coenurosis

Coenuriasis

Klippel-Feil Syndrome

Cervical Vertebral Fusion

Congenital Dystrophia Brevicollis

Cervical Fusion Syndrome

Klippel-Feil Deformity

Autosomal Dominant Klippel-Feil Syndrome

Congenital Synostosis Of Cervical Vertebrae

Klippel-Feil And Turner Syndrome

Klippel-Feil Deformity, Deafness And Facial Asymmetry

Klippel Feil Syndrome

Cervical Vertebral Fusion Syndrome

Dystrophia Brevicollis Congenita

Fusion Of Cervical Vertebrae

Kfs

Klippel-Feil Sequence

Vertebral Cervical Fusion Syndrome

Klippel-Feil Syndrome, Autosomal Dominant

Klippel-Feil Malformation

Isolated Klippel-Feil Syndrome

Ulna And Fibula, Absence Of, With Severe Limb Deficiency

Schinzel Phocomelia Syndrome

Aarrs

Limb/Pelvis-Hypoplasia/Aplasia Syndrome

LPHAS

Schinzel Type Phocomelia

Absence Of Ulna And Fibula With Severe Limb Deficiency

Al-Awadi/Raas-Rothschild Syndrome

Al Awadi-Raas-Rothschild Syndrome

Al-Awadi/Raas-Rothschild/Schinzel Phocomelia Syndrome

Aplasia/Hypoplasia Of Limbs And Pelvis

Congenital Absence Of Ulna And Fibula

Severe Limb Deficit

Phocomelia, Schinzel Type

Al-Awadi-Raas-Rothschild Syndrome

Ulna And Fibula Absence Of With Severe Limb Deficiency

Limb Pelvis Hypoplasia Aplasia Syndrome

Limb/Pelvis/Uterus-Hypoplasia/Aplasia Syndrome

Ulna And Fibula, Absence Of, With Sever Limb Deficiency

Spondyloepimetaphyseal Dysplasia With Joint Laxity

Dysplasia, Spondyloepimetaphyseal, With Joint Laxity

Semdjl

Spondyloepimetaphyseal Dysplasia Joint Laxity

Semd-Jl

Semdjl1

Spondyloepimetaphyseal Dysplasia With Joint Laxity Type 1

Spondyloepimetaphyseal Dysplasia With Joint Laxity, Beighton Type

Hereditary Spastic Paraplegia 51

Autosomal Dominant Spastic Paraplegia 51

Cpsq4

Spastic Quadriplegic Cerebral Palsy 4

Spg51

Spastic Paraplegia 51, Autosomal Recessive

Sotos Syndrome

Cerebral Gigantism

SOTOS

Chromosome 5q35 Deletion Syndrome

Sotos Syndrome 1, Formerly

Sotos1, Formerly

Distinctive Facial Appearance, Overgrowth In Childhood, And Learning Disabilities Or Delayed Development

Sotos Sequence

Sotos' Syndrome

Sotos1

Sotos Syndrome 1

Velocardiofacial Syndrome

Shprintzen Syndrome

VCFS

Chromosome 22q11.2 Deletion Syndrome

Vcf Syndrome

Shprintzen Vcf Syndrome

Vcf-Velocardiofacial Syndrome

Velo-Cardio-Facial Syndrome

Digeorge Syndrome

22q11 Deletion Syndrome

Conotruncal Anomaly Face Syndrome

Cakut

Renal Or Urinary Tract Malformation

Congenital Anomalies Of Kidney And Urinary Tract

Congenital Anomaly Of Kidney And Urinary Tract

Congenital Anomalies Of The Kidney And Urinary Tract

Kidney And Urinary Tract, Anomalies, Congenital

Renal Hypodysplasia, Nonsyndromic, 1

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Rattus norvegicus TBX6 RGD RGD:1307716
Felis catus TBX6 VGNC VGNC:66009
Macaca mulatta TBX6 VGNC VGNC:78276
Bos taurus TBX6 VGNC VGNC:35672
Mus musculus TBX6 MGD MGI:102539
Canis familiaris TBX6 VGNC VGNC:54076