TFCP2 - transcription factor CP2 Gene

Homo sapiens

Also known as LSF; SEF; LBP1C; LSF1D; TFCP2C

Gene ID: 7024 | Gene type: protein coding

About TFCP2

Cytogenetic location: 12q13.12-q13.13 Genomic coordinates (GRCh38): 12:51,093,656-51,173,135 (from NCBI)

This gene has 6 transcripts (splice variants), 215 orthologues and 5 paralogues. Ubiquitous expression in appendix (RPKM 10.8), lymph node (RPKM 10.8) and 25 other tissues.

Summary

This gene encodes a transcription factor that binds the alpha-globin promoter and activates transcription of the alpha-globin gene. The encoded protein regulates erythroid gene expression, plays a role in the transcriptional switch of globin gene promoters, and it activates many other cellular and viral gene promoters. The gene product interacts with certain inflammatory response factors, and polymorphisms of this gene may be involved in the pathogenesis of Alzheimer's disease. [provided by RefSeq, Mar 2010]

TFCP2 Products(3)

mRNA	Protein	Name
NM_001173452.2	NP_001166923.1	alpha-globin transcription factor CP2 isoform 2
NM_001173453.2	NP_001166924.1	alpha-globin transcription factor CP2 isoform 3
NM_005653.5	NP_005644.2	alpha-globin transcription factor CP2 isoform 1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Molecular Function GO Annotation	Evidence	Reference	Source
enables cis-regulatory region sequence-specific DNA binding	IDA IDA: Inferred from direct assay	16263792	GOA
enables protein binding	IPI IPI: Inferred from physical interaction	9685356	GOA
enables sequence-specific double-stranded DNA binding	IDA IDA: Inferred from direct assay	28473536	GOA
enables transcription factor binding	IPI IPI: Inferred from physical interaction	11003662	GOA

Biological Process GO Annotation	Evidence	Reference	Source
involved in mRNA transcription by RNA polymerase II	IDA IDA: Inferred from direct assay	11003662	GOA
involved in positive regulation of transcription by RNA polymerase II	IDA IDA: Inferred from direct assay	12089154	GOA
involved in regulation of transcription by RNA polymerase II	IDA IDA: Inferred from direct assay	16263792	GOA

Cellular Component GO Annotation	Evidence	Reference	Source
located in nucleus	IDA IDA: Inferred from direct assay	11003662	GOA
part of protein-containing complex	IDA IDA: Inferred from direct assay	11003662	GOA
part of protein-containing complex	IMP IMP: Inferred from mutant phenotype	16263792	GOA

EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

TFCP2 Protein Structure

CP2

0
100
200
300
400
502 a.a.

Protein Preferred Names

Protein Names

alpha-globin transcription factor CP2

SAA3 enhancer factor

Related Diseases

Diseases

Alias

Spindle Cell Rhabdomyosarcoma

Pleomorphic Rhabdomyosarcoma

Adult Pleomorphic Rhabdomyosarcoma	Anaplastic Rhabdomyosarcoma
Pleomorphic Rhabdomyosarcoma, Adult Type

Glanders

Farcy Pipes	Infection Due To Pseudomonas Mallei
Burkholderia Mallei	Burkholderia Mallei Infection
Equina	Equine Glanders
Farcy	Farcy Buds
Farcy Cords	Infection Due To Actinobacillus Mallei
Infection Due To Malleomyces Mallei	Maliasmus
Malleus	Farce
Actinobacillosis	Actinobacillus Infection

Colorectal Cancer, Hereditary Nonpolyposis, Type 2

HNPCC2	Fcc2
Coca2	Hereditary Nonpolyposis Colorectal Cancer Type 2
Colon Cancer, Familial Nonpolyposis, Type 2	Familial Nonpolyposis Colon Cancer Type 2
Hereditary Non-Polyposis Colorectal Cancer 2	Cancer, Colorectal, Nonpolyposis, Hereditary, Type 2

Lynch Syndrome I

Lynch Syndrome 1	Colorectal Cancer, Hereditary Nonpolyposis, Type 1
HNPCC1	Fcc1
Lynch Syndrome Ii	Colon Cancer, Familial Nonpolyposis, Type 1
Coca1	Familial Nonpolyposis Colon Cancer Type 1
Hereditary Nonpolyposis Colorectal Cancer Type 1	Hereditary Non-Polyposis Colorectal Cancer 1
Hereditary Non-Polyposis Colorectal Cancer 3	Hnpcc3
Lynch Cancer Family Syndrome	Lynch Syndrome
Lynch Syndrome Type I	Lynch Syndrome Type Ii
Cancer, Colorectal, Nonpolyposis, Hereditary, Type 1	Hereditary Nonpolyposis Colorectal Cancer
Colorectal Cancer, Hereditary Nonpolyposis, Type 3	Hereditary Non-Polyposis Colon Cancer Type 2

Embryonal Rhabdomyosarcoma

Rhabdomyosarcoma, Embryonal	Rhabdomyosarcoma Embryonal
Botryoid Rhabdomyosarcoma	Erms
Spindle Cell Rhabdomyosarcomas

Alzheimer Disease, Familial, 1

Alzheimer Disease	Alzheimer'S Disease
Presenile And Senile Dementia	AD1
Alzheimer Disease, Susceptibility To	Alzheimer Disease, Late-Onset, Susceptibility To
Alzheimer Disease 1, Familial	AD
Familial Alzheimer Disease	Alzheimer Disease, Late-Onset
Alzheimers Dementia	Alzheimer Dementia
Alzheimer Sclerosis	Alzheimer Syndrome
Alzheimer-Type Dementia	Dat
Primary Senile Degenerative Dementia	Sdat
Alzheimer Disease 1	Autosomal Dominant Alzheimer Disease
Early-Onset Alzheimer Disease With Cerebral Amyloid Angiopathy	Late Onset Alzheimer Disease
Alzheimers Disease	Alzheimer Disease, Early-Onset, With Cerebral Amyloid Angiopathy
Late-Onset Alzheimers Disease	Alzheimer'S Disease Pathway Kegg
Dementia Due To Alzheimer'S Disease	Alzheimer Disease Type 1
Alzheimers

Diseases	Alias
Waldenstroem'S Macroglobulinemia	Waldenstroem'S Macroglobulinemia Waldenstroem'S Macroglobulinemia Macroglobulinemia Of Waldenstrom Lymphoplasmacytic Lymphoma With Igm Gammopathy Lymphoplasmacytic Lymphoma Waldenstroem'S Macroglobulinemia Waldenstroem'S Macroglobulinemia Macroglobulinemia Of Waldenstrom Lymphoplasmacytic Lymphoma With Igm Gammopathy Lymphoplasmacytic Lymphoma

Related Agents

Pre-clinical Phase

Bioactive Molecules (5)

Cat. No.	Product Name	Effect	Purity	Rare Diseases
HY-12834A	MK2-IN-1 hydrochloride	Inhibitor	98.36%	Unkown
HY-12834	MK2-IN-1	Inhibitor	99.04%	Unkown
HY-162934	TFCP2L1-IN-1		/	Unkown
HY-RS14415	TFCP2 Human Pre-designed siRNA Set A	Pre-designed Sets	/	Unkown
HY-RS14416	TFCP2L1 Human Pre-designed siRNA Set A	Pre-designed Sets	/	Unkown

Orthologs Information

Species	Symbol	Source	ID
Mus musculus	TFCP2	MGD	MGI:98509
Macaca mulatta	TFCP2	VGNC	VGNC:78323
Felis catus	TFCP2	VGNC	VGNC:66113
Rattus norvegicus	TFCP2	RGD	RGD:1306738
Canis familiaris	TFCP2	VGNC	VGNC:47290
Bos taurus	TFCP2	VGNC	VGNC:35784
Others	TFCP2	NCBI

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