1. Gene
  2. HDAC2 - histone deacetylase 2 Gene

HDAC2 - histone deacetylase 2 Gene

Homo sapiens

Also known as HD2; RPD3; YAF1; KDAC2

Gene ID: 3066 | Gene type: protein coding

About HDAC2

Cytogenetic location: 6q21 Genomic coordinates (GRCh38): 6:113,933,028-113,971,148 (from NCBI)

This gene has 17 transcripts (splice variants), 205 orthologues and 10 paralogues. Ubiquitous expression in testis (RPKM 14.8), endometrium (RPKM 10.6) and 25 other tissues.

Summary

This gene product belongs to the histone deacetylase family. Histone deacetylases act via the formation of large multiprotein complexes, and are responsible for the deacetylation of lysine residues at the N-terminal regions of core histones (H2A, H2B, H3 and H4). This protein forms transcriptional repressor complexes by associating with many different proteins, including YY1, a mammalian zinc-finger transcription factor. Thus, it plays an important role in transcriptional regulation, cell cycle progression and developmental events. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2010]

HDAC2 Products(4)

mRNA Protein Name
NR_033441.2
NR_073443.2
NM_001527.4 NP_001518.3 histone deacetylase 2
XM_047418692.1 XP_047274648.1 histone deacetylase 2 isoform X1
Gene Ontology
  • Molecular Function
  • Biological Process
  • Cellular Component
Molecular Function GO Annotation Evidence Reference Source
enables NF-kappaB binding IPI
IPI: Inferred from physical interaction
17785205 GOA
enables RNA polymerase II-specific DNA-binding transcription factor binding IPI
IPI: Inferred from physical interaction
17827154 GOA
enables enzyme binding IPI
IPI: Inferred from physical interaction
11062478 GOA
enables histone binding IDA
IDA: Inferred from direct assay
19276356 GOA
enables histone deacetylase activity IDA
IDA: Inferred from direct assay
16642021 GOA
enables histone deacetylase binding IPI
IPI: Inferred from physical interaction
28046085 GOA
enables histone decrotonylase activity IDA
IDA: Inferred from direct assay
28497810 GOA
enables protein binding IPI
IPI: Inferred from physical interaction
9150135 GOA
enables protein de-2-hydroxyisobutyrylase activity IDA
IDA: Inferred from direct assay
29192674 GOA
enables protein lysine deacetylase activity IMP
IMP: Inferred from mutant phenotype
19041327 GOA
Biological Process GO Annotation Evidence Reference Source
involved in chromatin remodeling IDA
IDA: Inferred from direct assay
9790534 GOA
involved in heterochromatin formation IMP
IMP: Inferred from mutant phenotype
19372552 GOA
involved in negative regulation of DNA-binding transcription factor activity IMP
IMP: Inferred from mutant phenotype
19041327 GOA
involved in negative regulation of transcription by RNA polymerase II IMP
IMP: Inferred from mutant phenotype
19041327 GOA
involved in negative regulation of transcription by competitive promoter binding IMP
IMP: Inferred from mutant phenotype
19276356 GOA
involved in positive regulation of cell population proliferation IMP
IMP: Inferred from mutant phenotype
18347167 GOA
involved in positive regulation of proteolysis IMP
IMP: Inferred from mutant phenotype
19041327 GOA
acts upstream of positive regulation of signaling receptor activity IMP
IMP: Inferred from mutant phenotype
18316616 GOA
involved in positive regulation of transcription by RNA polymerase II IMP
IMP: Inferred from mutant phenotype
19041327 GOA
Cellular Component GO Annotation Evidence Reference Source
part of ESC/E(Z) complex IDA
IDA: Inferred from direct assay
20075857 GOA
part of NuRD complex IDA
IDA: Inferred from direct assay
17827154 GOA
part of Sin3-type complex IDA
IDA: Inferred from direct assay
14966270 GOA
located in chromosome, telomeric region IDA
IDA: Inferred from direct assay
25150861 GOA
located in cytoplasm IDA
IDA: Inferred from direct assay
24970816 GOA
part of histone deacetylase complex IDA
IDA: Inferred from direct assay
9651585 GOA
located in nucleus IDA
IDA: Inferred from direct assay
18347167 GOA
part of protein-containing complex IDA
IDA: Inferred from direct assay
28046085 GOA
EXP: Inferred from Experiment IDA: Inferred from direct assay IPI: Inferred from physical interaction IMP: Inferred from mutant phenotype IGI: Inferred from genetic interaction IEP: Inferred from expression pattern

HDAC2 Protein Structure

Hist_deacetyl

Hist_deacetyl: Histone deacetylase domain (26 - 319)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 488 a.a.
Protein Preferred Names Protein Names

histone deacetylase 2

YY1-associated factor 1

protein deacylase HDAC2

transcriptional regulator homolog RPD3

HDAC2 Protein-protein interaction Information

Type
Protein Name Protein ID Interactor Interactor Species Interactor ID Detection Method Reference
Cross
HDAC2 Q92769 P0DTD1-PRO_0000449623 SARS-CoV-2 P0DTD1-PRO_0000449623
Pull Down
33060197
Intra
HDAC2 Q92769 ZNF516 Homo sapiens Q92618
Anti Tag CoIP
35271311
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547
Anti Tag CoIP
23752268
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547
Crosslink
26949739
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547
Anti Bait CoIP
21258344
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547
Anti Bait CoIP
22416134
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547
Anti Tag CoIP
35271311
Intra
HDAC2 Q92769 HDAC1 Homo sapiens Q13547
Anti Tag CoIP
9150135
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3
Crosslink
26949739
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3
Anti Bait CoIP
21258344
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3
Anti Tag CoIP
35271311
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3
Pull Down
16254079
Intra
HDAC2 Q92769 SIN3A Homo sapiens Q96ST3
Anti Tag CoIP
23752268
Intra
HDAC2 Q92769 CSNK2A1 Homo sapiens P68400
Anti Tag CoIP
35271311
Intra
HDAC2 Q92769 SUV39H1 Homo sapiens O43463
Pull Down
12711603
Intra
HDAC2 Q92769 MYC Homo sapiens P01106
Display Tech
20195357
Intra
HDAC2 Q92769 BCL11B Homo sapiens Q9C0K0
Anti Tag CoIP
17245431
Intra
HDAC2 Q92769 BCL11B Homo sapiens Q9C0K0
Anti Tag CoIP
23752268
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330
Anti Tag CoIP
23752268
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330
Anti Bait CoIP
21258344
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330
Crosslink
26949739
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330
Anti Tag CoIP
35271311
Intra
HDAC2 Q92769 MTA1 Homo sapiens Q13330
Anti Bait CoIP
20651739
Intra
HDAC2 Q92769 BRMS1 Homo sapiens Q9HCU9
Anti Bait CoIP
21258344
Intra
HDAC2 Q92769 BRMS1 Homo sapiens Q9HCU9
Anti Tag CoIP
16919237
Intra
HDAC2 Q92769 BRMS1 Homo sapiens Q9HCU9
Anti Tag CoIP
23752268
Intra
HDAC2 Q92769 SRA1 Homo sapiens Q9HD15
Anti Bait CoIP
20398657
Intra
HDAC2 Q92769 DAXX Homo sapiens Q9UER7
CoIP
12140263
Intra
HDAC2 Q92769 MBD1 Homo sapiens Q9UIS9
Pull Down
12711603
Cross
HDAC2 Q92769 K8 Human herpesvirus 8 Q2HR82
Anti Bait CoIP
22416134
Intra
HDAC2 Q92769 RFX5 Homo sapiens P48382
Anti Bait CoIP
16464847
Intra
HDAC2 Q92769 RFX5 Homo sapiens P48382
Anti Tag CoIP
16464847
Cross: Cross-species interaction Intra: Intraspecies interaction

HDAC2 Antibodies

Cat. No. Product Name Application Reactivity
HY-P80699 HDAC2 Antibody (YA742) WB, ICC/IF Human, Mouse, Rat, Monkey

Related Diseases

Diseases Alias
Asthma

Chronic Obstructive Asthma

Asthma, Diminished Response To Antileukotriene Treatment In

Bronchial Hyperreactivity

Asthma, Susceptibility To

Asthma, Bronchial

Asthma, Protection Against

Asthma, Nocturnal, Susceptibility To

Nocturnal Asthma

Asthma-Related Traits

Asthma-Related Traits, Susceptibility To

Asthma, Nocturnal

Chronic Obstructive Asthma With Acute Exacerbation

Chronic Obstructive Asthma With Status Asthmaticus

Exercise Induced Asthma

Exercise-Induced Asthma

Bronchial Asthma

Asthma, Exercise-Induced

Idiosyncratic Asthma

Unspecified Asthma With Acute Exacerbation

Asthma, Unspecified, With Stated Status Asthmaticus

Status Asthmaticus Nos

Acute Severe Asthma

Acute Severe Bronchial Asthma

Status Asthma

Status Post Asthmaticus

Acute Promyelocytic Leukemia

Leukemia, Acute Promyelocytic

Acute Myeloblastic Leukemia Type 3

Aml M3

APL

Leukemia, Acute Promyelocytic, Somatic

Aml With T(15

17)(Q22

Q12)

(Pml/Raralpha) And Variants

Apml

Acute Myeloblastic Leukemia 3

Acute Myeloid Leukemia With T(15

17)(Q22

Q12)

(Pml/Raralpha) And Variants

Acute Myeloblastic Leukaemia Type 3

Acute Myeloid Leukaemia M3

Acute Myeloid Leukemia M3

Acute Promyelocytic Leukaemia

M3 Anll

Myeloid Leukemia, Acute, M3

Leukemia Promyelocytic Acute

Leukemia, Promyelocytic, Acute

Leukemia, Acute, Promyelocytic

Leukemia, Acute Myeloid

Acute Myeloid Leukemia

Leukemia, Acute Myelogenous

Acute Myelogenous Leukemia

AML

Leukemia, Acute Myeloid, Susceptibility To

Acute Myeloblastic Leukemia

Leukemia, Acute Myeloid, Reduced Survival In, Somatic

Acute Myeloid Leukaemia

Leukemia, Myelocytic, Acute

Therapy Related Acute Myeloid Leukemia And Myelodysplastic Syndrome

Secondary Aml

Acute Myelocytic Leukemia

Leukemia, Myeloid, Acute

Acute Myeloid Leukemia, Somatic

Leukemia, Acute Myeloid, Somatic

Myeloid Leukemia, Acute, M4/M4eo Subtype, Somatic

Acute Myeloblastic Leukaemia

Acute Myelogenous Leukaemia

Aml - Acute Myeloid Leukemia

Acute Myeloid Leukemia With Cebpa Somatic Mutations

Aml With Cebpa Somatic Mutations

Inherited Acute Myeloid Leukemia

Familial Aml

Inherited Aml

Pure Familial Aml

Pure Familial Acute Myeloid Leukemia

Secondary Acute Myeloid Leukemia

Therapy-Related Aml And Myelodysplastic Syndrome

Acute Myeloid Leukemia, Secondary

Acute Non-Lymphoblastic Leukemia

Acute Non-Lymphocytic Leukemia

Acute Biphenotypic Leukemia

Acute Undifferentiated Leukemia

Acute Myeloblastic Leukaemia With Multilineage Dysplasia

Acute Myeloid Leukaemia With Multilineage Dysplasia Without Mention Of Remission

Acute Myeloid Leukaemia With Myelodysplasia-Related Features

Chromosome 16p13.3 Deletion Syndrome, Proximal

Rubinstein-Taybi Syndrome

Broad Thumb-Hallux Syndrome

Chromosome 16p13.3 Deletion Syndrome

Rubinstein-Taybi Syndrome Due To 16p13.3 Microdeletion

Rubinstein Syndrome

Broad Thumbs-Halluces Syndrome

Rsts

Rubinstein-Taybi Deletion Syndrome

Rsts Deletion Syndrome

Proximal Chromosome 16p13.3 Deletion Syndrome

16p13.3 Deletion Syndrome

Broad Thumbs And Great Toes, Characteristic Facies, And Mental Retardation

Rts

Pulmonary Disease, Chronic Obstructive

Chronic Obstructive Pulmonary Disease

COPD

Pulmonary Disease, Chronic Obstructive, Severe Early-Onset

Chronic Obstructive Lung Disease

Chronic Obstructive Airway Disease

Pulmonary Disease, Chronic Obstructive, Susceptibility To

Cold

Severe Early-Onset Chronic Obstructive Pulmonary Disease

Pulmonary Disease Chronic Obstructive

Pulmonary Disease, Obstructive, Chronic, Susceptibility To

Chronic Obstructive Pulmonary Disease Of Horses

Common Cold

Upper Respiratory Infections

Copd - [Chronic Obstructive Pulmonary Disease]

Coad - [Chronic Obstructive Airways Disease]

Cold - [Chronic Obstructive Lung Disease]

Chronic Airway Disease Nos

Chronic Airways Limitation, Unspecified

Chronic Obstructed Airway, Unspecified

Chronic Obstructive Airway Disease, Unspecified

Chronic Obstructive Airway, Unspecified

Obstructive Lung Disease Nos

Chronic Obstructive Lung Disease Nos

Chronic Obstructive Lung Nos

Obstructive Pulmonary Disease Nos

Exacerbation Copd Nos

Acute Exacerbation Copd

Muscular Dystrophy

Muscular Dystrophies

Congenital Md

Congenital Muscular Dystrophy

Cmd

Mdc

Dystrophy, Muscular

Gower'S Muscular Dystrophy

Progressive Musclular Dystrophy

Pseudohypertrophic Atrophy

Pseudohypertrophic Muscle Paralysis

Pseudohypertrophic Muscular Atrophy

Pseudohypertrophic Muscular Dystrophy

Pseudohypertrophic Paralysis

Pseudomuscular Hypertrophy

Primary Hyperoxaluria

Hyperoxaluria, Primary

Oxalosis

Hyperoxaluria

Primary Oxalosis

Congenital Oxaluria

D-Glycerate Dehydrogenase Deficiency

Glyceric Aciduria

Glycolic Aciduria

Hepatic Agt Deficiency

Oxaluria, Primary

Peroxisomal Alanine:Glyoxylate Aminotransferase Deficiency

Primary Oxaluria

Hyperoxaluria Primary

Primary Hyperoxaluria Type 2

Primary Hyperoxaluria, Type I

Optic Atrophy 10 With Or Without Ataxia, Mental Retardation, And Seizures

OPA10

Optic Atrophy 10 With Or Without Ataxia, Intellectual Disability, And Seizures

Optic Atrophy 10

Atrophy, Optic, Type 10, With/Without Ataxia, Mental Retardation, And Seizures

Prostate Cancer

Prostate Carcinoma

Prostate Cancer, Familial

Prostate Neoplasm

Prostate Cancer, Somatic

Prostate Cancer, Susceptibility To

Prostatic Cancer

Prostatic Neoplasms

Hereditary Prostate Cancer

Prostatic Neoplasm

Cancer Of Prostate

Carcinoma Of Prostate

Familial Prostate Cancer

Familial Prostate Carcinoma

Malignant Tumor Of Prostate

Malignant Neoplasm Of Prostate

Prostate Cancer, Familial, Susceptibility To

Malignant Tumor Of The Prostate

Ngp - New Growth Of Prostate

Tumor Of The Prostate

Prostate Cancer, Hereditary

Cancer Of The Prostate

Malignant Neoplasm Of The Prostate

Prostatic Carcinoma

PC

Prca

Cancer, Prostate

Malignant Prostatic Tumour

Malignant Tumour Of Prostate

Primary Prostate Cancer

Primary Malignant Neoplasm Of Prostate

Prostate Gland Cancer

Cystic Fibrosis

Mucoviscidosis

CF

Pseudomonas Aeruginosa, Susceptibility To Chronic Infection By, In Cystic Fibrosis

Pseudomonas Aeruginosa Chronic Infection By, In Cystic Fibrosis

Cystic Fibrosis Lung Disease, Modifier Of

Cystic Fibrosis Of Pancreas

Fibrocystic Disease Of Pancreas

Cf - [Cystic Fibrosis]

Cystic Fibrosis Nos

Fibrocystic Disease

Fibrocystic Disease Of The Pancreas

Mucoviscidosis Of Pancreas

Nonproliferative Fibrocystic Disease

Pancreatic Cystic Fibrosis

Colorectal Cancer

Colon Cancer

Colorectal Carcinoma

Colon Carcinoma

Colorectal Cancer, Susceptibility To

Carcinoma Of Colon

CRC

Colorectal Cancer With Chromosomal Instability, Somatic

Colon Cancer, Somatic

Colon Cancer, Susceptibility To

Colonic Neoplasms

Colorectal Neoplasms

Colorectal Cancer, Somatic

Colon Cancer, Advanced, Somatic

Colonic Carcinoma

Colorectal Carcinomas

Colon Cancers

Colorectal Cancers

Cancer, Colorectal, Somatic

Cancer, Colon

Cancer, Colorectal, Susceptibility To

Colorectal Neoplasm

Colonic Neoplasm

Malignant Tumor Of Colon

Hutchinson-Gilford Progeria Syndrome

Progeria

HGPS

Hutchinson-Gilford Syndrome

Hutchinson-Gilford Progeria

Hutchinson Gilford Syndrome

Hutchinson-Gilford Disease

Hutchinson Gilford Progeria Syndrome

Progeria Of Childhood

Hutchinson-Gilford-Progeria Syndrome

Lung Disease

Lung Diseases

Disorder Of Lung

Abnormality Of The Lung

Peripheral T-Cell Lymphoma

Lymphoma T-Cell Peripheral

Mature T-Cell And Nk-Cell Lymphoma

Mature T-Cell And Natural Killer Cell Lymphoma

Nk-T Cell Lymphoma

Rett Syndrome

Atypical Rett Syndrome

RTT

Rts

Autism, Dementia, Ataxia, And Loss Of Purposeful Hand Use

Rett Syndrome, Atypical

Rett Syndrome, Preserved Speech Variant

Rett'S Disorder

Rett Syndrome Variant

Rett Disorder

Cerebroatrophic Hyperammonemia

Rett Like Syndrome

Autism-Dementia-Ataxia-Loss Of Purposeful Hand Use Syndrome

Rett'S Syndrome

Atypical Rtt

Autism-Dementia-Ataxia-Loss Of Purposeful Hand Use

Rett Syndrome Preserved Speech Variant

Rett Syndrome Zappella Variant

Rett Syndrome, Zappella Variant

Nervous System Disease

Abnormality Of The Nervous System

Nervous System Diseases

Nervous System Disorder

Otopalatodigital Syndrome, Type I

Otopalatodigital Syndrome Type 1

Taybi Syndrome

OPD1

Opd Syndrome 1

Oto-Palato-Digital Syndrome Type 1

Opd I Syndrome

Oto-Palato-Digital Syndrome, Type I

Otopalatodigital Syndrome Type I

Opd Syndrome

Cranioorodigital Syndrome

Faciopalatoosseous Syndrome

Fpo

Opd Syndrome, Type 1

Otopalatodigital Syndrome 1

Diseases Alias
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Orthologs Information

Species Symbol Source ID
Rattus norvegicus HDAC2 RGD RGD:619976
Canis familiaris HDAC2 VGNC VGNC:49101
Mus musculus HDAC2 MGD MGI:1097691
Bos taurus HDAC2 VGNC VGNC:50610
Felis catus HDAC2 VGNC VGNC:97454
Macaca mulatta HDAC2 VGNC VGNC:73358